CaltechAUTHORS
  A Caltech Library Service

Items where Person is "Pimentel-H"

Up a level
Export as [feed] Atom [feed] RSS 1.0 [feed] RSS 2.0
Group by: Date | Item Type | First Author | No Grouping
Jump to: 2019 | 2018 | 2017 | 2016 | 2015 | 2014 | 2012 | 2011
Number of items: 14.

2019

McGee, Warren A. and Pimentel, Harold and Pachter, Lior et al. (2019) Compositional Data Analysis is necessary for simulating and analyzing RNA-Seq data. . (Unpublished) https://resolver.caltech.edu/CaltechAUTHORS:20190304-085432513

2018

Yi, Lynn and Pimentel, Harold and Bray, Nicolas L. et al. (2018) Gene-level differential analysis at transcript-level resolution. Genome Biology, 19 . Art. No. 53. ISSN 1474-760X. PMCID PMC5896116. https://resolver.caltech.edu/CaltechAUTHORS:20180416-090553011

2017

Melsted, Páll and Hateley, Shannon and Joseph, Isaac Charles et al. (2017) Fusion detection and quantification by pseudoalignment. . (Unpublished) https://resolver.caltech.edu/CaltechAUTHORS:20181029-134221299

Schaeffer, L. and Pimentel, H. and Bray, N. et al. (2017) Pseudoalignment for metagenomic read assignment. Bioinformatics, 33 (14). pp. 2082-2088. ISSN 1367-4803. PMCID PMC5870846. https://resolver.caltech.edu/CaltechAUTHORS:20170306-131027010

Pimentel, Harold and Bray, Nicolas L. and Puente, Suzette et al. (2017) Differential analysis of RNA-seq incorporating quantification uncertainty. Nature Methods, 14 (7). pp. 687-690. ISSN 1548-7091. https://resolver.caltech.edu/CaltechAUTHORS:20170612-084553487

Yi, Lynn and Pimentel, Harold and Pachter, Lior (2017) Zika infection of neural progenitor cells perturbs transcription in neurodevelopmental pathways. PLoS ONE, 12 (4). Art. No. e0175744. ISSN 1932-6203. PMCID PMC5407828. https://resolver.caltech.edu/CaltechAUTHORS:20170505-103858288

2016

Pimentel, Harold and Sturmfels, Pascal and Bray, Nicolas et al. (2016) The Lair: a resource for exploratory analysis of published RNA-Seq data. BMC Bioinformatics, 17 (1). Art. No. 490. ISSN 1471-2105. PMCID PMC5131447. https://resolver.caltech.edu/CaltechAUTHORS:20190506-141348569

Pimentel, Harold and Conboy, John G. and Pachter, Lior (2016) Keep Me Around: Intron Retention Detection and Analysis. . (Submitted) https://resolver.caltech.edu/CaltechAUTHORS:20170306-132431515

Bray, Nicolas L. and Pimentel, Harold and Melsted, Páll et al. (2016) Near-optimal probabilistic RNA-seq quantification. Nature Biotechnology, 34 (5). pp. 525-527. ISSN 1087-0156. https://resolver.caltech.edu/CaltechAUTHORS:20190506-110012992

Pimentel, Harold and Parra, Marilyn and Gee, Sherry L. et al. (2016) A dynamic intron retention program enriched in RNA processing genes regulates gene expression during terminal erythropoiesis. Nucleic Acids Research, 44 (2). pp. 838-851. ISSN 0305-1048. PMCID PMC4737145. https://resolver.caltech.edu/CaltechAUTHORS:20170303-131213123

2015

Bray, Nicolas L. and Pimentel, Harold and Melsted, Páll et al. (2015) Near-optimal RNA-Seq quantification. . (Unpublished) https://resolver.caltech.edu/CaltechAUTHORS:20170303-114628470

2014

Pimentel, Harold and Parra, Marilynn and Gee, Sherry et al. (2014) A dynamic alternative splicing program regulates gene expression during terminal erythropoiesis. Nucleic Acids Research, 42 (6). pp. 4031-4042. ISSN 0305-1048. PMCID PMC3973340. https://resolver.caltech.edu/CaltechAUTHORS:20170303-143819723

2012

Trapnell, Cole and Roberts, Adam and Goff, Loyal et al. (2012) Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks. Nature Protocols, 7 (3). pp. 562-578. ISSN 1754-2189. PMCID PMC3334321. https://resolver.caltech.edu/CaltechAUTHORS:20170303-165006599

2011

Roberts, Adam and Pimentel, Harold and Trapnell, Cole et al. (2011) Identification of novel transcripts in annotated genomes using RNA-Seq. Bioinformatics, 27 (17). pp. 2325-2329. ISSN 1367-4803. https://resolver.caltech.edu/CaltechAUTHORS:20170306-101954304

This list was generated on Tue Aug 4 09:43:48 2020 PDT.