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Items where Person is "Vaidehi-N"

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Number of items: 35.

2017

Lee, Sangbae and Devamani, Titu and Song, Hyun Deok et al. (2017) Distinct structural mechanisms determine substrate affinity and kinase activity of protein kinase Cα. Journal of Biological Chemistry, 292 (39). pp. 16300-16309. ISSN 0021-9258. PMCID PMC5625059. https://resolver.caltech.edu/CaltechAUTHORS:20171009-115239146

2012

Pascal, Tod A. and Goddard, William A., III and Maiti, Prabal K. et al. (2012) Role of Specific Cations and Water Entropy on the Stability of Branched DNA Motif Structures. Journal of Physical Chemistry B, 116 (40). pp. 12159-12167. ISSN 1520-6106. https://resolver.caltech.edu/CaltechAUTHORS:20121113-113520226

Abrol, Ravinder and Griffith, Adam R. and Bray, Jenelle K. et al. (2012) Structure Prediction of G Protein-Coupled Receptors and Their Ensemble of Functionally Important Conformations. In: Membrane Protein Structure and Dynamics: Methods and Protocols. Methods in Molecular Bology. No.914. Springer , New York, pp. 237-254. ISBN 978-1-62703-022-9. https://resolver.caltech.edu/CaltechAUTHORS:20120924-135021664

2007

Heo, Jiyoung and Vaidehi, Nagarajan and Wendel, John et al. (2007) Prediction of the 3-D structure of rat MrgA G protein-coupled receptor and identification of its binding site. Journal of Molecular Graphics and Modelling, 26 (4). pp. 800-812. ISSN 1093-3263. PMCID PMC2151207. https://resolver.caltech.edu/CaltechAUTHORS:20190226-155229153

Li, Youyong and Zhu, Fangqiang and Vaidehi, Nagarajan et al. (2007) Prediction of the 3D Structure and Dynamics of Human DP G-Protein Coupled Receptor Bound to an Agonist and an Antagonist. Journal of the American Chemical Society, 129 (35). pp. 10720-10731. ISSN 0002-7863. PMCID PMC2535578. https://resolver.caltech.edu/CaltechAUTHORS:20170515-111024186

Maiti, Prabal K. and Pascal, Tod A. and Vaidehi, Nagarajan et al. (2007) Understanding DNA based Nanostructures. Journal of Nanoscience and Nanotechnology, 7 (6). pp. 1712-1720. ISSN 1533-4880. https://resolver.caltech.edu/CaltechAUTHORS:MAIjnn07

Ryman-Rasmussen, Jessica P. and Griffith, Adam and Oloff, Scott et al. (2007) Functional selectivity of dopamine D_1 receptor agonists in regulating the fate of internalized receptors. Neuropharmacology, 52 (2). pp. 562-575. ISSN 0028-3908. PMCID PMC1855220. https://resolver.caltech.edu/CaltechAUTHORS:20190227-080144342

2006

Vaidehi, Nagarajan and Schyler, Sabine and Trabanino, Rene J. et al. (2006) Predictions of CCR1 Chemokine Receptor Structure and BX 471 Antagonist Binding Followed by Experimental Validation. Journal of Biological Chemistry, 281 (37). pp. 27613-27620. ISSN 0021-9258. https://resolver.caltech.edu/CaltechAUTHORS:VAIjbc06

Gama, Cristal I. and Tully, Sarah E. and Sotogaku, Naoki et al. (2006) Sulfation patterns of glycosaminoglycans encode molecular recognition and activity. Nature Chemical Biology, 2 (9). pp. 467-473. ISSN 1552-4450. https://resolver.caltech.edu/CaltechAUTHORS:20150408-095647687

Trabanino, Rene J. and Vaidehi, Nagarajan and Goddard, William A., III (2006) Exploring the Molecular Mechanism for Color Distinction in Humans. Journal of Physical Chemistry B, 110 (34). pp. 17230-17239. ISSN 1520-6106. https://resolver.caltech.edu/CaltechAUTHORS:20170609-074403703

McClendon, Christopher L. and Vaidehi, Nagarajan and Kam, Victor Wai Tak et al. (2006) Fidelity of seryl-tRNA synthetase to binding of natural amino acids from HierDock first principles computations. Protein Engineering, Design and Selection, 19 (5). pp. 195-203. ISSN 1741-0126. https://resolver.caltech.edu/CaltechAUTHORS:20110711-100506607

Spijker, Peter and Vaidehi, Nagarajan and Freddolino, Peter L. et al. (2006) Dynamic behavior of fully solvated beta2-adrenergic receptor, embedded in the membrane with bound agonist or antagonist. Proceedings of the National Academy of Sciences of the United States of America, 103 (13). pp. 4882-4887. ISSN 0027-8424. PMCID PMC1458764. https://resolver.caltech.edu/CaltechAUTHORS:SPIpnas06

Maiti, Prabal K. and Pascal, Tod A. and Vaidehi, Nagarajan et al. (2006) Atomic-Level Simulations of Seeman DNA Nanostructures: The Paranemic Crossover in Salt Solution. Biophysical Journal, 90 (5). pp. 1463-1479. ISSN 0006-3495. PMCID PMC1367300. https://resolver.caltech.edu/CaltechAUTHORS:20190226-161805256

2005

Hummel, Patrick and Vaidehi, Nagarajan and Floriano, Wely B. et al. (2005) Test of the Binding Threshold Hypothesis for olfactory receptors: Explanation of the differential binding of ketones to the mouse and human orthologs of olfactory receptor 912-93. Protein Science, 14 (3). pp. 703-710. ISSN 0961-8368. PMCID PMC2279295. https://resolver.caltech.edu/CaltechAUTHORS:20190301-092706597

2004

Maiti, Prabal K. and Pascal, Tod A. and Vaidehi, Nagarajan et al. (2004) The stability of Seeman JX DNA topoisomers of paranemic crossover (PX) molecules as a function of crossover number. Nucleic Acids Research, 32 (20). pp. 6047-6056. ISSN 0305-1048. PMCID PMC534617. https://resolver.caltech.edu/CaltechAUTHORS:MAInar04

Datta, Deepshikha and Vaidehi, Nagarajan and Zhang, Deqiang et al. (2004) Selectivity and specificity of substrate binding in methionyl-tRNA synthetase. Protein Science, 13 (10). pp. 2693-2705. ISSN 0961-8368. PMCID PMC2286561. https://resolver.caltech.edu/CaltechAUTHORS:20170409-074101946

Hall, Spencer E. and Floriano, Wely B. and Vaidehi, Nagarajan et al. (2004) Predicted 3-D Structures for Mouse I7 and Rat I7 Olfactory Receptors and Comparison of Predicted Odor Recognition Profiles with Experiment. Chemical Senses, 29 (7). pp. 595-616. ISSN 0379-864X. https://resolver.caltech.edu/CaltechAUTHORS:20111013-095420851

Rogstad, Daniel K. and Heo, Jiyoung and Vaidehi, Nagarajan et al. (2004) 5-Formyluracil-Induced Perturbations of DNA Function. Biochemistry, 43 (19). pp. 5688-5697. ISSN 0006-2960. https://resolver.caltech.edu/CaltechAUTHORS:20170125-114501336

Floriano, Wely B. and Vaidehi, Nagarajan and Goddard, William A., III (2004) Making Sense of Olfaction through Predictions of the 3-D Structure and Function of Olfactory Receptors. Chemical Senses, 29 (4). pp. 269-290. ISSN 0379-864X. https://resolver.caltech.edu/CaltechAUTHORS:20111013-073734976

Trabanino, Rene J. and Hall, Spencer E. and Vaidehi, Nagarajan et al. (2004) First Principles Predictions of the Structure and Function of G-Protein-Coupled Receptors: Validation for Bovine Rhodopsin. Biophysical Journal, 86 (4). pp. 1904-1921. ISSN 0006-3495. PMCID PMC1304048. https://resolver.caltech.edu/CaltechAUTHORS:20190301-092706690

Kalani, M. Yashar S. and Vaidehi, Nagarajan and Hall, Spencer E. et al. (2004) The predicted 3D structure of the human D2 dopamine receptor and the binding site and binding affinities for agonists and antagonists. Proceedings of the National Academy of Sciences of the United States of America, 101 (11). pp. 3815-3820. ISSN 0027-8424. PMCID PMC374327. https://resolver.caltech.edu/CaltechAUTHORS:KALpnas04

Freddolino, Peter L. and Kalani, M. Yashar S. and Vaidehi, Nagarajan et al. (2004) Predicted 3D structure for the human β2 adrenergic receptor and its binding site for agonists and antagonists. Proceedings of the National Academy of Sciences of the United States of America, 101 (9). pp. 2736-2741. ISSN 0027-8424. PMCID PMC365690. https://resolver.caltech.edu/CaltechAUTHORS:20141120-150243775

Floriano, Wely B. and Vaidehi, Nagarajan and Zamanakos, Georgios et al. (2004) HierVLS Hierarchical Docking Protocol for Virtual Ligand Screening of Large-Molecule Databases. Journal of Medicinal Chemistry, 47 (1). pp. 56-71. ISSN 0022-2623 . https://resolver.caltech.edu/CaltechAUTHORS:20170419-103945779

2003

Kekenes-Huskey, Peter M. and Vaidehi, Nagarajan and Floriano, Wely B. et al. (2003) Fidelity of Phenylalanyl-tRNA Synthetase in Binding the Natural Amino Acids. Journal of Physical Chemistry B, 107 (41). pp. 11549-11557. ISSN 1520-6106. https://resolver.caltech.edu/CaltechAUTHORS:20170524-071408453

Wintrode, Patrick L. and Zhang, Deqiang and Vaidehi, Nagarajan et al. (2003) Protein Dynamics in a Family of Laboratory Evolved Thermophilic Enzymes. Journal of Molecular Biology, 327 (3). pp. 745-757. ISSN 0022-2836. https://resolver.caltech.edu/CaltechAUTHORS:20180823-075442841

2002

Wang, Pin and Vaidehi, Nagarajan and Tirrell, David A. et al. (2002) Virtual Screening for Binding of Phenylalanine Analogues to Phenylalanyl-tRNA Synthetase. Journal of the American Chemical Society, 124 (48). pp. 14442-14449. ISSN 0002-7863. https://resolver.caltech.edu/CaltechAUTHORS:20150116-152910657

Vaidehi, Nagarajan and Floriano, Wely B. and Trabanino, Rene J. et al. (2002) Prediction of structure and function of G protein-coupled receptors. Proceedings of the National Academy of Sciences of the United States of America, 99 (20). pp. 12622-12627. ISSN 0027-8424. PMCID PMC130510. https://resolver.caltech.edu/CaltechAUTHORS:20141120-095059378

Zhang, Deqiang and Vaidehi, Nagarajan and Goddard, William A., III et al. (2002) Structure-based design of mutant Methanococcus jannaschii tyrosyl-tRNA synthetase for incorporation of O-methyl-L-tyrosine. Proceedings of the National Academy of Sciences of the United States of America, 99 (10). pp. 6579-6584. ISSN 0027-8424. PMCID PMC124445. https://resolver.caltech.edu/CaltechAUTHORS:20141124-133350326

Datta, Deepshikha and Vaidehi, Nagarajan and Xu, Xin et al. (2002) Mechanism for antibody catalysis of the oxidation of water by singlet dioxygen. Proceedings of the National Academy of Sciences of the United States of America, 99 (5). pp. 2636-2641. ISSN 0027-8424. PMCID PMC122400. https://resolver.caltech.edu/CaltechAUTHORS:20141120-095436298

2001

Tang, Yi and Ghirlanda, Giovanna and Vaidehi, Nagarajan et al. (2001) Stabilization of Coiled-Coil Peptide Domains by Introduction of Trifluoroleucine. Biochemistry, 40 (9). pp. 2790-2796. ISSN 0006-2960. https://resolver.caltech.edu/CaltechAUTHORS:20150122-091952579

Vaidehi, Nagarajan and Goddard, William A., III (2001) Atomic-Level Simulation and Modeling of Biomacromolecules. In: Computational Modeling of Genetic and Biochemical Networks. MIT Press , Cambridge, MA, pp. 161-188. ISBN 0262024810. https://resolver.caltech.edu/CaltechAUTHORS:20190627-122009397

2000

Floriano, Wely B. and Vaidehi, Nagarajan and Goddard, William A., III et al. (2000) Molecular mechanisms underlying differential odor responses of a mouse olfactory receptor. Proceedings of the National Academy of Sciences of the United States of America, 97 (20). pp. 10712-10716. ISSN 0027-8424. PMCID PMC27088. https://resolver.caltech.edu/CaltechAUTHORS:20141121-143114886

Vaidehi, Nagarajan and Goddard, William A., III (2000) Domain Motions in Phosphoglycerate Kinase using Hierarchical NEIMO Molecular Dynamics Simulations. Journal of Physical Chemistry A, 104 (11). pp. 2375-2383. ISSN 1089-5639. https://resolver.caltech.edu/CaltechAUTHORS:20170719-080126858

1997

Vaidehi, Nagarajan and Goddard, William A., III (1997) The pentamer channel stiffening model for drug action on human rhinovirus HRV-1A. Proceedings of the National Academy of Sciences of the United States of America, 94 (6). pp. 2466-2471. ISSN 0027-8424. PMCID PMC20111. https://resolver.caltech.edu/CaltechAUTHORS:20141202-110010303

1996

Vaidehi, Nagarajan and Jain, Abhinandan and Goddard, William A., III (1996) Constant Temperature Constrained Molecular Dynamics:  The Newton−Euler Inverse Mass Operator Method. Journal of Physical Chemistry, 100 (25). pp. 10508-10517. ISSN 0022-3654 . https://resolver.caltech.edu/CaltechAUTHORS:20180720-145322871

This list was generated on Sun Oct 13 15:31:54 2019 PDT.