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Number of items: 34.

A

Arighi, Cecilia N. and Van Auken, Kimberly and Li, Yuling et al. (2013) An overview of the BioCreative 2012 Workshop Track III: interactive text mining task. Database : The Journal of Biological Databases and Curation, 2013 . Art. No. bas056 . ISSN 1758-0463. PMCID PMC3625048. http://resolver.caltech.edu/CaltechAUTHORS:20130410-154721740

B

Blake, J. A. and Chan, J. and Kishore, R. et al. (2015) Gene Ontology Consortium: going forward. Nucleic Acids Research, 43 (D1). D1049-D1056. ISSN 0305-1048. PMCID PMC4383973. http://resolver.caltech.edu/CaltechAUTHORS:20150409-154316585

Balakrishnan, Rama and Harris, Midori A. and Huntley, Rachael et al. (2013) A guide to best practices for Gene Ontology (GO) manual annotation. Database : The Journal of Biological Databases and Curation, 2013 . Art. No. bat054. ISSN 1758-0463. PMCID PMC3706743. http://resolver.caltech.edu/CaltechAUTHORS:20130821-090650974

Blake, J. A. and Chan, J. and Kishore, R. et al. (2013) Gene Ontology Annotations and Resources. Nucleic Acids Research, 41 (D1). D530-D535. ISSN 0305-1048. PMCID PMC3531070. http://resolver.caltech.edu/CaltechAUTHORS:20130204-141831710

Bieri, Tamberlyn and Blasiar, Darin and Ozersky, Philip et al. (2006) WormBase: new content and better access. Nucleic Acids Research, 35 (Databa). D1-D5. ISSN 0305-1048. PMCID PMC1669750. http://resolver.caltech.edu/CaltechAUTHORS:BIEnar06advacc

C

Chan, J. and Cho, J. and Gao, S. et al. (2019) The Gene Ontology Resource: 20 years and still GOing strong. Nucleic Acids Research, 47 (D1). D330-D338. ISSN 0305-1048. http://resolver.caltech.edu/CaltechAUTHORS:20190415-100854557

Carbon, S. and Chan, J. and Kishore, R. et al. (2017) Expansion of the Gene Ontology knowledgebase and resources. Nucleic Acids Research, 45 (D1). D331-D338. ISSN 0305-1048. PMCID PMC5210579. http://resolver.caltech.edu/CaltechAUTHORS:20170331-093423187

Chan, J. and Kishore, R. and Sternberg, P. et al. (2012) The Gene Ontology: enhancements for 2011. Nucleic Acids Research, 40 (D1). D559-D564. ISSN 0305-1048. PMCID PMC3245151. http://resolver.caltech.edu/CaltechAUTHORS:20120210-100230074

Chen, Nansheng and Harris, Todd W. and Antoshechkin, Igor et al. (2005) WormBase: a comprehensive data resource for Caenorhabditis biology and genomics. Nucleic Acids Research, 33 (Databa). D383-D389. ISSN 0305-1048. PMCID PMC540020. http://resolver.caltech.edu/CaltechAUTHORS:CHEnar05

D

Druzinsky, Robert E. and Balhoff, James P. and Crompton, Alfred W. et al. (2016) Muscle Logic: New Knowledge Resource for Anatomy Enables Comprehensive Searches of the Literature on the Feeding Muscles of Mammals. PLoS ONE, 11 (2). Art. No. e0149102. ISSN 1932-6203. PMCID PMC4752357. http://resolver.caltech.edu/CaltechAUTHORS:20160222-104844651

F

Fang, Ruihua and Schindelman, Gary and Van Auken, Kimberly et al. (2012) Automatic categorization of diverse experimental information in the bioscience literature. BMC Bioinformatics, 13 . Art. No. 16. ISSN 1471-2105. PMCID PMC3305665. http://resolver.caltech.edu/CaltechAUTHORS:20120320-105305942

G

Grove, Christian and Cain, Scott and Chen, Wen J. et al. (2018) Using WormBase: A Genome Biology Resource for Caenorhabditis elegans and Related Nematodes. In: Eukaryotic Genomic Databases. Methods in Molecular Biology. No.1757. Humana Press , New York, NY, pp. 399-470. ISBN 9781493977369. PMCID PMC6424801. http://resolver.caltech.edu/CaltechAUTHORS:20190321-082336924

Gaudet, Pascale and Van Auken, Kimberly (2012) Recent advances in biocuration: Meeting Report from the fifth International Biocuration Conference. Database: The Journal of Biological Databases and Curation, 2012 . Art. No. bas036. ISSN 1758-0463. PMCID PMC3483532. http://resolver.caltech.edu/CaltechAUTHORS:20130405-104232601

Gaudet, Pascale and Chisholm, Rex and Berardini, Tanya et al. (2009) The Gene Ontology's Reference Genome Project: A Unified Framework for Functional Annotation across Species. PLoS Computational Biology, 5 (7). e1000431. ISSN 1553-734X. PMCID PMC2699109. http://resolver.caltech.edu/CaltechAUTHORS:20090911-153559023

H

Huntley, Rachael P. and Sitnikov, Dmitry and Orlic-Milacic, Marija et al. (2016) Guidelines for the functional annotation of microRNAs using the Gene Ontology. RNA, 22 (5). pp. 667-676. ISSN 1355-8382. PMCID PMC4836642. http://resolver.caltech.edu/CaltechAUTHORS:20160307-112011723

Howe, Kevin L. and Bolt, Bruce J. and Cain, Scott et al. (2016) WormBase 2016: expanding to enable helminth genomic research. Nucleic Acids Research, 44 (D1). D774-D780. ISSN 0305-1048. PMCID PMC4702863. http://resolver.caltech.edu/CaltechAUTHORS:20151124-111442659

Huntley, Rachael P. and Harris, Midori A. and Alam-Faruque, Yasmin et al. (2014) A method for increasing expressivity of Gene Ontology annotations using a compositional approach. BMC Bioinformatics, 15 . Art. No. 155. ISSN 1471-2105. PMCID PMC4039540. http://resolver.caltech.edu/CaltechAUTHORS:20140626-153759091

Harris, Todd W. and Chan, Juancarlos and Chen, Wen J. et al. (2014) WormBase 2014: new views of curated biology. Nucleic Acids Research, 42 . D789-D793. ISSN 0305-1048. PMCID PMC3965043. http://resolver.caltech.edu/CaltechAUTHORS:20131112-152912465

Hill, David P. and Berardini, Tanya Z. and Howe, Douglas G. et al. (2010) Representing Ontogeny Through Ontology: A Developmental Biologist’s Guide to The Gene Ontology. Molecular Reproduction and Development, 77 (4). pp. 314-329. ISSN 1040-452X . PMCID PMC2830379. http://resolver.caltech.edu/CaltechAUTHORS:20100412-083317622

Harris, Todd W. and Antoshechkin, Igor and Bieri, Tamberlyn et al. (2010) WormBase: a comprehensive resource for nematode research. Nucleic Acids Research, 38 (D1). D463-D467. ISSN 0305-1048. PMCID PMC2808986. http://resolver.caltech.edu/CaltechAUTHORS:20100527-134537612

Harris, Todd W. and Chen, Nansheng and Cunningham, Fiona et al. (2004) WormBase: a multi-species resource for nematode biology and genomics. Nucleic Acids Research, 32 (Databa). D411-D417. ISSN 0305-1048. PMCID PMC308800. http://resolver.caltech.edu/CaltechAUTHORS:HARnar04

L

Lee, Raymond Y. N. and Arnaboldi, Valerio and Chan, Juancarlos et al. (2018) WormBase 2017: molting into a new stage. Nucleic Acids Research, 46 (D1). D869-D874. ISSN 0305-1048. PMCID PMC5753391. http://resolver.caltech.edu/CaltechAUTHORS:20171030-085417622

M

Müller, H.-M. and Van Auken, Kimberly M. and Li, Y. et al. (2018) Textpresso Central: a customizable platform for searching, text mining, viewing, and curating biomedical literature. BMC Bioinformatics, 19 . Art. No. 94. ISSN 1471-2105. PMCID PMC5845379. http://resolver.caltech.edu/CaltechAUTHORS:20180309-075052784

Mortensen, Jonathan M. and Telis, Natalie and Hughey, Jake J. et al. (2016) Is the crowd better as an assistant or a replacement in ontology engineering? An exploration through the lens of the Gene Ontology. Journal of Biomedical Informatics, 60 . pp. 199-209. ISSN 1532-0464. PMCID PMC4836980. http://resolver.caltech.edu/CaltechAUTHORS:20160222-091718577

Mao, Yuqing and Van Auken, Kimberly (2014) Overview of the gene ontology task at BioCreative IV. Database : The Journal of Biological Databases and Curation, 2014 . Art. No. bau 086. ISSN 1758-0463. PMCID PMC4142793. http://resolver.caltech.edu/CaltechAUTHORS:20140902-131532950

R

Rogers, Anthony and Antoshechkin, Igor and Bieri, Tamberlyn et al. (2008) WormBase 2007. Nucleic Acids Research, 36 (Supple). D612-D617. ISSN 0305-1048. PMCID PMC2238927. http://resolver.caltech.edu/CaltechAUTHORS:ROGnar08

S

Stark, Chris and Breitkreutz, Bobby-Joe and Chatr-aryamontri, Andrew et al. (2011) The BioGRID Interaction Database: 2011 update. Nucleic Acids Research, 39 (Supple). D698-D704. ISSN 0305-1048. PMCID PMC3013707. http://resolver.caltech.edu/CaltechAUTHORS:20110322-093738471

Schwarz, Erich M. and Antoshechkin, Igor and Bastiani, Carol et al. (2006) WormBase: better software, richer content. Nucleic Acids Research, 34 (Databa). D475-D478. ISSN 0305-1048. PMCID PMC1347424. http://resolver.caltech.edu/CaltechAUTHORS:SCHWnar06

V

Van Auken, Kimberly and Schaeffer, Mary L. and McQuilton, Peter et al. (2014) BC4GO: a full-text corpus for the BioCreative IV GO task. Database : The Journal of Biological Databases and Curation, 2014 . Art. No. 74. ISSN 1758-0463. PMCID PMC4112614. http://resolver.caltech.edu/CaltechAUTHORS:20140829-131503355

Van Auken, Kimberly and Druzinsky, Robert and Done, James et al. (2014) Textpresso for oro-pharyngeal anatomy: a system for searching the full text of anatomy literatures. FASEB Journal, 28 (1). 338.3. ISSN 0892-6638. http://resolver.caltech.edu/CaltechAUTHORS:20150205-104258509

Van Auken, Kimberly and Fey, Petra and Berardini, Tanya Z. et al. (2012) Text mining in the biocuration workflow: applications for literature curation at WormBase, dictyBase and TAIR. Database : The Journal of Biological Databases and Curation, 2012 . Art. No. bas040. ISSN 1758-0463. PMCID PMC3500519. http://resolver.caltech.edu/CaltechAUTHORS:20130118-102637703

Van Auken, Kimberly and Jaffery, Joshua and Chan, Juancarlos et al. (2009) Semi-automated curation of protein subcellular localization: a text mining-based approach to Gene Ontology (GO) Cellular Component curation. BMC Bioinformatics, 10 (228). ISSN 1471-2105. PMCID PMC2719631. http://resolver.caltech.edu/CaltechAUTHORS:20090911-153603785

W

Wang, Qinghua and Wang, Xiaodong and Van Auken, Kimberly (2016) Overview of the interactive task in BioCreative V. Database: The Journal of Biological Databases and Curation, 2016 . Art. No. baw119. ISSN 1758-0463. PMCID PMC5009325. http://resolver.caltech.edu/CaltechAUTHORS:20161018-094110037

Y

Yook, Karen and Chan, Juancarlos and Chen, Wen J. et al. (2012) WormBase 2012: more genomes, more data, new website. Nucleic Acids Research, 40 (D1). D735-D741. ISSN 0305-1048. PMCID PMC3245152. http://resolver.caltech.edu/CaltechAUTHORS:20120214-071150526

This list was generated on Thu Jul 18 02:54:57 2019 PDT.