Published June 2, 2022
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Metadata retrieval from sequence databases with ffq
Abstract
We present a command-line tool, called ffq, for querying user-generated data and metadata from sequence databases. The code can be found here: https://github.com/pachterlab/ffq.
Additional Information
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY 4.0 International license. Version 1 - May 19, 2022; Version 2 - May 26, 2022. This work was motivated by the need to obtain metadata for (Booeshaghi and Pachter, 2020). We thank Ali Mortazavi for his suggestion to include ffq querying of the ENCODE database. This work was funded in part by NIH U19MH114830. The authors have declared no competing interest.Attached Files
Submitted - 2022.05.18.492548v2.full.pdf
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2022.05.18.492548v2.full.pdf
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Additional details
- Eprint ID
- 115010
- Resolver ID
- CaltechAUTHORS:20220602-62681600
- U19MH114830
- NIH
- Created
-
2022-06-02Created from EPrint's datestamp field
- Updated
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2023-06-13Created from EPrint's last_modified field
- Caltech groups
- Division of Biology and Biological Engineering