The β-subunit of tryptophan synthase is a latent tyrosine synthase
Abstract
Aromatic amino acids and their derivatives are diverse primary and secondary metabolites with critical roles in protein synthesis, cell structure and integrity, defense and signaling. All de novo aromatic amino acid production relies on a set of ancient and highly conserved chemistries. Here we introduce a new enzymatic transformation for L-tyrosine synthesis by demonstrating that the β-subunit of tryptophan synthase—which natively couples indole and L-serine to form L-tryptophan—can act as a latent ‘tyrosine synthase’. A single substitution of a near-universally conserved catalytic residue unlocks activity toward simple phenol analogs and yields exclusive para carbon–carbon bond formation to furnish L-tyrosines. Structural and mechanistic studies show how a new active-site water molecule orients phenols for a nonnative mechanism of alkylation, with additional directed evolution resulting in a net >30,000-fold rate enhancement. This new biocatalyst can be used to efficiently prepare valuable L-tyrosine analogs at gram scales and provides the missing chemistry for a conceptually different pathway to L-tyrosine.
Copyright and License
© The Author(s), under exclusive licence to Springer Nature America, Inc. 2024.
Acknowledgement
We thank the following past and present members of the Arnold Laboratory for helpful discussions on the manuscript and experimental assistance: A. Buller, T. Boville, D. Romney, E. Watkins-Dulaney, S. Brinkmann-Chen and N. Goldberg, among many others. We thank S. Du for helpful discussions and J. Kaiser from the Caltech Molecular Observatory for crystallography support. This work was supported by the National Institute of General Medical Sciences (NIGMS) of the National Institutes of Health (NIH) under award R01GM125887. The content is solely the responsibility of the authors and does not necessarily represent the official views of the NIH. Individual support comes from Nagendranath Reddy Graduate Fellowship (to P.J.A.); Caltech Biotechnology Leadership Program (BLP; NIH training grant 5T32GM112592-5 to K.E.J.); Caltech AI4Science/Amazon AWS Fellowship (to K.E.J.); Merck–Helen Hay Whitney Postdoctoral Fellowship (to N.J.P.); Ruth L. Kirschstein NIH Postdoctoral Fellowship (1F32GM143797-01A1 to J.L.K.); National Science Foundation Graduate Research Fellowship Program (GRFP; grant DGE‐1745301 to V.C.B.); Fonds de recherche du Québec Nature et technologie (FRQNT; to J.D.). The funders had no role in study design, data collection and analysis, decision to publish or preparation of the manuscript.
Contributions
P.J.A. and F.H.A. conceptualized the project. P.J.A., K.E.J., N.J.P., J.L.K. and V.C.B. conducted the investigation. P.J.A., K.E.J., N.J.P., V.C.B., J.L.K. and J.D. performed validation. P.J.A. wrote the original draft. P.J.A., K.E.J., N.J.P., J.L.K., V.C.B., J.D. and F.H.A. reviewed and edited the manuscript. F.H.A. secured funding and provided supervision.
Data Availability
All data, including the 18,719 annotated TrpB-like sequences, are available in the main text or supplementary materials. Full protein crystallographic data have been deposited with the PDB (https://www.rcsb.org) under accession codes 8EGY, 8EGZ, 8EH0 and 8EH1. Source data are provided with this paper.
Conflict of Interest
P.J.A. and F.H.A. are inventors on patent applications filed by the California Institute of Technology that cover enzymatic synthesis of tyrosine analogs from analogs of phenol and serine (US17/985,033 and PCT/US2022/049617, pending). The other authors declare no competing interests.
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Additional details
- ISSN
- 1552-4469
- URL
- https://rdcu.be/dH0tl
- National Institutes of Health
- R01GM125887
- Stanford University
- Nagendranath Reddy Graduate Fellowship
- National Institutes of Health
- NIH Predoctoral Fellowship 5T32GM112592-5
- Amazon (United States)
- Caltech AI4Science/Amazon AWS Fellowship
- Helen Hay Whitney Foundation
- National Institutes of Health
- NIH Postdoctoral Fellowship 1F32GM143797-01A1
- National Science Foundation
- NSF Graduate Research Fellowship DGE-1745301
- Fonds de Recherche du Québec – Nature et Technologies
- Caltech groups
- Division of Biology and Biological Engineering