Published October 22, 2015 | Version Supplemental Material
Journal Article Open

Single cell activity reveals direct electron transfer in methanotrophic consortia

  • 1. ROR icon California Institute of Technology
  • 2. ROR icon Tokyo Metropolitan University
  • 3. ROR icon Ames Research Center
  • 4. ROR icon Search for Extraterrestrial Intelligence

Abstract

Multicellular assemblages of microorganisms are ubiquitous in nature, and the proximity afforded by aggregation is thought to permit intercellular metabolic coupling that can accommodate otherwise unfavourable reactions. Consortia of methane-oxidizing archaea and sulphate-reducing bacteria are a well-known environmental example of microbial co-aggregation; however, the coupling mechanisms between these paired organisms is not well understood, despite the attention given them because of the global significance of anaerobic methane oxidation. Here we examined the influence of interspecies spatial positioning as it relates to biosynthetic activity within structurally diverse uncultured methane-oxidizing consortia by measuring stable isotope incorporation for individual archaeal and bacterial cells to constrain their potential metabolic interactions. In contrast to conventional models of syntrophy based on the passage of molecular intermediates, cellular activities were found to be independent of both species intermixing and distance between syntrophic partners within consortia. A generalized model of electric conductivity between co-associated archaea and bacteria best fit the empirical data. Combined with the detection of large multi-haem cytochromes in the genomes of methanotrophic archaea and the demonstration of redox-dependent staining of the matrix between cells in consortia, these results provide evidence for syntrophic coupling through direct electron transfer.

Additional Information

© 2015 Macmillan Publishers Limited. Received 06 March 2015 Accepted 10 August 2015 Published online 16 September 2015. We are grateful for the use of the facilities of the Beckman Resource Center for Transmission Electron Microscopy at Caltech (BRCem) and advice provided by A. McDowall, our collaborators T. Deerinck and M. Ellisman from the National Center for Microscopy and Imaging Research (NCMIR), C. Miele (UGA) and M. El-Naggar at USC. Metagenomic binning of ANME-2b was conducted by C. Skennerton and M. Haroon in collaboration with G. Tyson and M. Imelfort (University of Queensland). This work was supported by the US Department of Energy, Office of Science, Office of Biological Environmental Research under award numbers (DE-SC0004949 and DE-SC0010574) and a grant from the Gordon and Betty Moore foundation Marine Microbiology Initiative (grant number 3780). V.J.O. is supported by a DOE-BER early career grant (DE-SC0003940). S.E.M. acknowledges support from an Agouron Geobiology Option post-doctoral fellowship in the Division of Geological and Planetary Sciences at Caltech and C.P.K. was supported by the NASA Astrobiology Institute (award number NNA13AA92A). This is NAI-Life Underground Publication 049. Author Contributions: V.J.O., S.M. and G.L.C. devised the study, S.M. and G.L.C. conducted the experiments and analyses and C.P.K. conducted the diffusion and electrical conductivity modelling, and all authors contributed to data interpretation and writing of the manuscript.

Attached Files

Supplemental Material - nature15512-s1.pdf

Supplemental Material - nature15512-sf1.jpg

Supplemental Material - nature15512-sf2.jpg

Supplemental Material - nature15512-sf3.jpg

Supplemental Material - nature15512-sf4.jpg

Supplemental Material - nature15512-sf5.jpg

Supplemental Material - nature15512-sf6.jpg

Supplemental Material - nature15512-sf7.jpg

Supplemental Material - nature15512-sf8.jpg

Supplemental Material - nature15512-sf9.jpg

Files

nature15512-s1.pdf

Files (4.9 MB)

Name Size Download all
md5:714ac51eed185648cbb49d375fe3539b
843.1 kB Preview Download
md5:922c358d7f03b3878dc46c7b5f25eb7d
555.7 kB Preview Download
md5:43a632bb59ce46c76e6f78061b5a4b21
371.5 kB Preview Download
md5:26e31d972775487c6cf3e7f822be3e11
172.9 kB Preview Download
md5:ea702b64d25b2b14d6192b807b515015
487.0 kB Preview Download
md5:6f257829d444695f9c2b40c868461593
386.1 kB Preview Download
md5:782a693f516aa0ad00095fa795621f07
230.9 kB Preview Download
md5:4478aed51c0aeddb16ce8ddc0af69ee4
1.1 MB Preview Download
md5:27b8d0cb9acbe22cd796a2016f85b82c
427.0 kB Preview Download
md5:f0f868c2f55de763de4cf4187ef2a6eb
379.9 kB Preview Download

Additional details

Identifiers

Eprint ID
59070
DOI
10.1038/nature15512
Resolver ID
CaltechAUTHORS:20150729-141906854

Related works

Describes
10.1038/nature15512 (DOI)

Funding

Department of Energy (DOE)
DE-SC0004949
Department of Energy (DOE)
DE-SC0010574
Gordon and Betty Moore Foundation
3780
Department of Energy (DOE)
DE-SC0003940
Agouron Institute
NASA
NNA13AA92A

Dates

Created
2015-09-17
Created from EPrint's datestamp field
Updated
2021-11-10
Created from EPrint's last_modified field

Caltech Custom Metadata

Caltech groups
Division of Geological and Planetary Sciences (GPS)
Other Numbering System Name
NAI-Life Underground
Other Numbering System Identifier
049