Enzymatic Assembly of Diverse Lactone Structures: An Intramolecular C–H Functionalization Strategy
Abstract
Lactones are cyclic esters with extensive applications in materials science, medicinal chemistry, and the food and perfume industries. Nature’s strategy for the synthesis of many lactones found in natural products always relies on a single type of retrosynthetic strategy, a C–O bond disconnection. Here, we describe a set of laboratory-engineered enzymes that use a new-to-nature C–C bond-forming strategy to assemble diverse lactone structures. These engineered “carbene transferases” catalyze intramolecular carbene insertions into benzylic or allylic C–H bonds, which allow for the synthesis of lactones with different ring sizes and ring scaffolds from simple starting materials. Starting from a serine-ligated cytochrome P450 variant previously engineered for other carbene-transfer activities, directed evolution generated a variant P411-LAS-5247, which exhibits a high activity for constructing a five-membered ε-lactone, lactam, and cyclic ketone products (up to 5600 total turnovers (TTN) and >99% enantiomeric excess (ee)). Further engineering led to variants P411-LAS-5249 and P411-LAS-5264, which deliver six-membered δ-lactones and seven-membered ε-lactones, respectively, overcoming the thermodynamically unfavorable ring strain associated with these products compared to the γ-lactones. This new carbene-transfer activity was further extended to the synthesis of complex lactone scaffolds based on fused, bridged, and spiro rings. The enzymatic platform developed here complements natural biosynthetic strategies for lactone assembly and expands the structural diversity of lactones accessible through C–H functionalization.
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Acknowledgement
This work was supported by the National Science Foundation Division of Molecular and Cellular Biosciences (MCB-2016137 to F.H.A). D.J.W. acknowledges support from the National Science Foundation Graduate Research Fellowship (DGE-1745301). R.M. acknowledges support from the Swiss National Science Foundation (SNSF) Early Mobility Postdoctoral Fellowship (P2ELP2_195118). K.M.S. acknowledges support from NIH Ruth L. Kirschstein National Research Service Award (1F32GM145123-01A1). We thank Dr. Michael K. Takase and Lawrence M. Henling for assistance with X-ray crystallographic data collection and Dr. Scott C. Virgil for the maintenance of the Caltech Center for Catalysis and Chemical Synthesis (3CS). We thank Dr. Mona Shahgoli for mass spectrometry assistance and Dr. David VanderVelde for the maintenance of the Caltech NMR facility. We also thank Dr. Sabine Brinkmann-Chen for the helpful discussions and comments on the manuscript. The paper is adapted from a thesis, which is available free of charge via the Internet at https://resolver.caltech.edu/CaltechTHESIS:09022023-064950039.
Contributions
D.J.W. and R.M. contributed equally.
Conflict of Interest
The authors declare no competing financial interest.
Data Availability
The Supporting Information is available free of charge at https://pubs.acs.org/doi/10.1021/jacs.3c11722.
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Full experimental details along with the descriptions of ancillary experiments and crystallographic data for 6a, 8a, and 8f
CCDC 2287784–2287785 and 2288858 contain the supplementary crystallographic data for this paper.
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Additional details
- ISSN
- 1520-5126
- National Science Foundation
- MCB-2016137
- National Science Foundation
- NSF Graduate Research Fellowship DGE-1745301
- Swiss National Science Foundation
- P2ELP2_195118
- National Institutes of Health
- NIH Postdoctoral Fellowship 1F32GM145123-01A1
- California Institute of Technology
- Caltech groups
- Division of Biology and Biological Engineering